Bioreactor connectors

ABSTRACT

Aspects of the disclosure relate to rotating bioreactors and articles and methods that are useful for adapting a rotating bioreactor for use with tissues or scaffolds of different sizes. In some embodiments, bioreactors comprising a reservoir and an arbor assembly are provided herein, in which the arbor assembly comprises a rotatable support to which a tissue or tissue scaffold can be attached.

RELATED APPLICATIONS

This Application is a national stage entry of PCT/US2014/030030 filed onMar. 14, 2014 which claims priority under 35 U.S.C. § 119 (e) to U.S.Provisional Application Ser. No. 61/791,950, entitled “BIOREACTORCONNECTORS” filed on Mar. 15, 2013, which is herein incorporated byreference in its entirety.

BACKGROUND

Engineered tissues or organs can be produced ex vivo (for example in abioreactor) and implanted into a host (e.g., a human patient) in orderto replace or supplement an injured, diseased, or otherwise failingorgan in the host. Engineered tissues or organs can be produced in abioreactor by cellularizing a support structure referred to as ascaffold. Current techniques for producing scaffolds that can becellularized ex vivo include methods that involve decellularizing anatural organ or tissue to produce an acellular scaffold of naturalstructural material, or methods that involve configuring a syntheticmaterial to mimic a shape of a natural scaffold.

SUMMARY

Aspects of the disclosure relate to rotating bioreactors and articlesand methods that are useful for adapting a rotating bioreactor for usewith tissues or scaffolds of different sizes. Bioreactors describedherein can be used for decellularizing a tissue and/or for seeding cellsonto natural or synthetic scaffold structures, and/or for conditioningscaffolds, patches, tubes, or other natural or synthetic material (e.g.,that is conditioned to increase compatibility with cells or tissue thatare contacted with or grown on the material). Accordingly, in someembodiments the present disclosure relates generally to articles andmethods for growing tissues and organs, and, more specifically, togrowing tissues and organs using rotating bioreactors. In someembodiments, the present disclosure relates to conditioning articles,for example by coating them with a biocompatible material (e.g., aproteinaceous material, for example, extracellular material). In someembodiments, the articles and methods can be used to form biocompatiblestructures for tissue engineering and organ replacement.

In some embodiments, bioreactors comprising a reservoir and arborassembly are provided herein. Accordingly, in some embodiments, abioreactor arbor assembly is provided in which the arbor assembly actsas a support to which a tissue or tissue scaffold can be attached,thereby allowing the tissue or tissue scaffold to be rotated within afluid in the reservoir of a bioreactor. In some embodiments, the arborassembly comprises i) a first cylindrical end and a second cylindricalend, in which the first and second cylindrical ends are connected via anelongate member, ii) a first cannula unit connected to the first end,and iii) a second cannula unit connected to the second end. In someembodiments, the first and second cannula units are connected viathreaded screws onto the first and second ends. In some embodiments, aspacer unit is positioned between the first cannula and the first end.In some embodiments, a first opening of a tubular scaffold is attachedto the first cannula and a second opening of a tubular scaffold isattached to the second cannula. In some embodiments, the elongate memberis a shaft. In some embodiments, the two cylindrical ends confront oneanother. In some embodiments, the first cannula unit comprises anorifice and the second cannula unit comprises an orifice, wherein thefirst and second cannula units are arranged such that they confront oneanother along a longitudinal axis that passes through the two orifices.

BRIEF DESCRIPTION OF THE DRAWINGS

FIG. 1 depicts a non-limiting embodiment of a bioreactor comprises ahousing with a reservoir;

FIG. 2 depicts a non-limiting embodiment of a bioreactor;

FIG. 3 illustrates a non-limiting embodiment of a bioreactor arborassembly;

FIG. 4 illustrates a non-limiting embodiment of an arbor assembly thatis aligned to be inserted into the bioreactor reservoir;

FIG. 5 illustrates a non-limiting embodiment where the driveshaft andvalve are removed from the reservoir block prior to sterilization; and

FIG. 6A is a perspective view of a non-limiting embodiment of abioreactor reservoir;

FIG. 6B is a cut-away perspective view of a non-limiting embodiment of abioreactor reservoir; and

FIG. 6C is a cut-away side view of a non-limiting embodiment of abioreactor reservoir (arrows depict direction of fluid flow).

DETAILED DESCRIPTION

Aspects of the disclosure relate to rotating bioreactors and articlesand methods that are useful for adapting a rotating bioreactor for usewith tissues or scaffolds of different sizes. Bioreactors describedherein can be used for decellularizing a tissue and/or for seeding cellsonto natural or synthetic scaffold structures and/or for conditioningnatural or synthetic material for use with tissue or cellular material.In some embodiments, the present disclosure relates generally toarticles and methods for growing tissues and organs, and, morespecifically, to growing tissues and organs using rotating bioreactors.In some embodiments, the articles and methods can be used to formbiocompatible structures for tissue engineering and organ replacement.The subject matter of the present invention involves, in some cases,interrelated products, alternative solutions to a particular problem,and/or a plurality of different uses of one or more systems and/orarticles.

In some embodiments, a bioreactor comprises a housing with a reservoir(see FIG. 1 for example) and an arbor assembly (see FIG. 2 for example)that can be placed in the reservoir and connected to a drive shaft thatcan be used to rotate the arbor assembly around a longitudinal axiswithin the reservoir. The arbor assembly acts as a support to which atissue or tissue scaffold can be attached, thereby allowing the tissueor tissue scaffold to be rotated within a fluid in the reservoir. Insome embodiments, the arbor includes a cannula at each end that can beused to attach to each end of a tubular tissue or scaffold to form afluid pathway that allows fluid to be passed through (e.g., pumpedthrough) the lumen of the tissue or scaffold. In some embodiments, thefluid in the lumen is different from the fluid in the reservoir.Accordingly, two separate fluid pathways can be used independently andconnected (e.g., via appropriate tubing) to separate external reservoirsand/or pumps in some embodiments. However, it should be appreciated thatthe same fluid can be used in both pathways in some embodiments, asdescribed in more detail herein.

It should be appreciated that the arbor assembly can be placedhorizontally within a reservoir as illustrated in FIG. 1. However, inother embodiments a bioreactor can be configured such that the arbor isplace vertically within the bioreactor and the opening of the bioreactoris at one end of the arbor (e.g., with the lid placed over one end ofthe arbor) as aspects of the disclosure are not limited in this respect.

In some embodiments, the disclosure relates to articles and methods foradjusting the end-to-end length between the cannulae on the arbor. Insome embodiments, the disclosure relates to articles and methods foradjusting the outer diameter of the cannula at each end of the arbor.These features allow a bioreactor described herein to be used withtubular tissues and/or synthetic or natural scaffolds having differentlengths and inner diameters.

In some embodiments, a bioreactor described herein can be used todecellularize a tubular tissue (e.g., a natural trachea). In someembodiments, a bioreactor described herein can be used to conditionand/or recellularize a synthetic or natural scaffold (e.g., to produce asynthetic airway that can be implanted into a subject, for example ahuman subject). In some embodiments, scaffolds are formed as tubularstructures that can be seeded with cells to form tubular tissue regions(e.g., tracheal, bronchial, or other tubular regions). It should beappreciated that a tubular region can be a cylinder with a uniformdiameter. However, in some embodiments, a tubular region can have anyappropriate tubular shape (for example, including portions withdifferent diameters along the length of the tubular region). A tubularregion also can include a branch or a series of branches. In someembodiments, a tubular scaffold is produced having an opening at oneend, both ends, or a plurality of ends (e.g., in the case of a branchedscaffold). However, a tubular scaffold may be closed at one, both, orall ends, as aspects of the invention are not limited in this respect.It also should be appreciated that aspects of the invention may be usedto produce scaffolds for any type or organ, including hollow and solidorgans, as the invention is not limited in this respect. In someembodiments, aspects of the invention are useful to enhancecellularization of a tubular scaffold that includes an opening at eachend. In some embodiments, a scaffold is a natural scaffold obtained froma decellularized tissue. In some embodiments, a scaffold is a syntheticscaffold produced from electrospun, molded, cast, or other synthetic orpolymeric material, or a combination thereof.

In some embodiments, a bioreactor described herein is a rotating, doublechamber bioreactor designed for cell seeding and culturing of bothsurfaces of a tubular scaffold. In some embodiments, chambers of abioreactor are defined by a scaffold that is placed between the twoopposing cannulae, in which the space inside the scaffold is the innerchamber (or a portion of the inner chamber) and the space outside thescaffold bounded by the reservoir is the outer chamber (or part of theouter chamber). In some embodiments, the bioreactor allows rotationalmovement of the scaffold around its longitudinal axis. In someembodiments, a polymeric chamber houses the biological materialsthroughout the culture period. In some embodiments, cylindrical scaffoldholders are constructed with working ends of different diameters—tosupport scaffold of different dimensions—and a central portion ofsmaller diameter to expose the luminal surface of the scaffold for cellseeding and culturing.

In some embodiments, a co-axial conduit links the inner chamber to theexternal environment through the chamber wall. This provides access toprovide solutions that are useful for seeding and feeding the luminalsurface of a construct. In some embodiments, secondary elements movingwith the scaffold holder induce continuous mixing of the culture mediumto increase oxygenation and mass transport. In some embodiments,secondary elements moving with the scaffold can be used to transportfluid (e.g., a growth medium or cellular solution) from an inner chamberto an outer chamber, from an outer chamber to an inner chamber, from areservoir to an inner or outer chamber, or to distribute fluid over thesurface of the scaffold (for example by collecting it from the outerchamber and depositing over the rotating surface (e.g., outer surface)of the scaffold.

In some embodiments, a bioreactor described herein is used incombination with a drive motor base plate that aligns the reservoir withthe drive motor, a control unit that provides an independent controllerof rotational speed (however, other controllers can be used); and amotor drive that is responsible for rotating arbor and scaffold.However, it should be appreciated that different drive configurationsmay be used to connect the scaffold support to the drive motor includingmechanical and/or electromagnetic connections between the arbor (e.g.,including a driveshaft) and a motor and/or including magnetic and/orelectromagnetic bearings.

FIG. 1 illustrates a non-limiting embodiment of a bioreactor (cover notshown). A driveshaft (100) connects the shaft that links the motor tothe arbor allowing for rotational control. A reservoir (110) provides acavity within which the arbor and scaffold can be placed within a volumeof reagent and/or medium. A retainer clamp (120) can be used to clampthe reactor to a solid surface (e.g., a table or other solid surface). Afunction control valve (130) allows selection of multiple flow pathsdescribed in more detail herein. A drive motor base plate (140) alignsthe reservoir with the drive motor (e.g., electrical motor, servo motor,etc.) or other suitable driver. A level control valve (150) allows thelevel of the medium in the reservoir to be controlled.

The function control valve allows several flow paths to be selected. Ina first position, the lumen flow is blocked. In some embodiments, thisallows pressure to be increased within the lumen of the scaffold. In asecond position, the lumen flow is connected to the lumen flow outlet sothat the medium/reagent can be removed from the reactor. In a thirdposition, lumen flow is re-circulated into the reservoir.

In some embodiments, a valve of the disclosure comprises a cavity (e.g.,well, hole, recess) within the body (housing) of the bioreactor (e.g.,integral to the wall of the reservoir) and a valve element that isadapted to fit into the cavity. The valve element may be configured witha rotatable member (e.g., cylinder) with one or passages that directflow through the body (e.g., into or out from the reservoir). In someembodiments, the valve element may be configured with a rotatable member(e.g., cylinder) with one or passages that direct flow through the body,such that in one rotated position the valve is closed and prevents flowthrough the body and in another rotated position the valve elementdefines a passage (e.g., inlet or outlet passage) that provides fluidcommunication with the reservoir. In certain positions, fluid flowoccurs when a passage within the body of the valve element lines up withpassages within the body of the bioreactor (e.g., within the wall of thereservoir) that are connected to the reservoir or other fluid inlets oroutlets as described herein. In some embodiments, fluid flow does notoccur when the valve element is positioned (e.g., rotated) such that atleast one end of a passage through the body of the valve element doesnot line up with a passage in the body of the bioreactor. Accordingly,different valve elements can be used to control the fluid connectionbetween different flow paths and chamber within a bioreactor.

FIG. 2 illustrates a non-limiting embodiment of a bioreactor showingnon-limiting embodiments of a seal wash inlet (200), a lumen flow inlet(210), a seal wash outlet (220), a lumen flow outlet (230), a reservoirinlet (240), and a reservoir outlet (250).

FIG. 3 illustrates a non-limiting embodiment of an arbor assemblyshowing non-limiting embodiments of spacers (300) that are attached to afirst end of the arbor assembly to reduce cannula-to-cannula distance,an exposed cannula (310) onto which a scaffold can be attached, an arbor(320) that connects the two ends of the arbor assembly, examples of astackable spacer (340) and cannulas of different sizes (330, 350, and360). In some embodiments, an arbor assembly includes a first end (e.g.,a first cylindrical end) that is adapted to connect to the drive shaft,and a second end (e.g., a second cylindrical end) that is adapted to fitin a pocket at an end of the reservoir adjacent to the lumen flow inletin order to form a fluid connection with the fluid flow inlet. In someembodiments, the first and second ends of the arbor are separated by aconnector rod (e.g., one or more connector rods) that determine thedistance between the first and second ends. In some embodiments, the oneor more connector rods are located away from the central axis of thearbor assembly to avoid interfering with the scaffold or tissue that isconnected to the cannulae. In some embodiments, two connector rods areincluded to provide increased rigidity. In some embodiments, twoconnector rods are adjacent to each other on the arbor end pieces. Insome embodiments, two connector rods are approximately diametricallyopposite each other on opposite sides of the arbor end pieces. However,other configurations can be used as aspects of the disclosure are notlimited in this respect. Connector rods can be metal and/or polymericrods, or made of any other suitable material.

In some embodiments, a cannula is provided at each end of the arbor sothat each end of a tubular scaffold (e.g., a synthetic or naturalscaffold being recellularized) or tissue (e.g., an airway tissue beingdecellularized) can be attached to a cannula and connected to theintralumenal flow path. In some embodiments, one or both cannulae areprovided as units that can be detached form the arbor (e.g., using athreaded screw fitting to the arbor, or using any other connectorconfiguration that allows the cannulae to be readily removed from thearbor, for example, including but not limited to, a clip, a compressionseal or fitting, a quick disconnect, a twist-lock connector, or othersuitable connector, wherein each connector configuration can optionallyinclude one or more sealing elements such as a washer, gasket, O-ring,or other seal to prevent fluid leaks when connected). This allows aspacer unit to be placed between the arbor end and the cannula therebyshortening the end-to-end distance between the cannulae on the arbor. Insome embodiments, the spacer has a connector configuration that iscompatible with the cannulae and arbor connectors (e.g., a threadedscrew or other connector configuration that allows the cannulae andspacers to be readily connected or disconnected, for example, includingbut not limited to, a clip, a compression seal or fitting, a quickdisconnect, a twist-lock connector, or other suitable connector, whereineach connector configuration can optionally include one or more sealingelements such as a washer, gasket, O-ring, or other seal to preventfluid leaks when connected). In some embodiments, two or more spacerscan be connected end-to-end (e.g., stacked) to further shorten theend-to-end distance between the assembled cannulae on the arbor. Itshould be appreciated that in some embodiments a spacer has a connectorconfiguration that is compatible with another spacer configuration sothat they can be readily stacked. For example, spacers can haveconnector configurations that can be readily connected or disconnected(e.g., a threaded screw or other connector configuration that allows thecannulae and spacers to be readily connected or disconnected, forexample, including but not limited to, a clip, a compression seal orfitting, a quick disconnect, a twist-lock connector, or other suitableconnector, wherein each connector configuration can optionally includeone or more sealing elements such as a washer, gasket, O-ring, or otherseal to prevent fluid leaks when connected). In some embodiments, theconnector configurations for connecting the spacers to each other, forconnecting a space to a cannula, and/or for connecting a cannula to anarbor can be the same or similar. However, in some embodiments they aredifferent as aspects of the disclosure are not limited in this respect.

It also should be appreciated that the spacers can be provided indifferent lengths (e.g., from several mm to several cm depending on thesize of the reactor). In some embodiments, the spacers are up to 2 mm,up to 5 mm, 10 mm, up to 25 mm, up to 50 mm, up to 100 mm long or more.In some embodiments, the spacers are in a range of 2 mm to 10 mm, 2 mmto 50, 10 mm to 50 mm, or 10 mm to 100 mm. In some embodiments, at leastone spacer is used at each end of the arbor. However, in someembodiments, a cannula unit is attached directly to each end of thearbor. The size of the organ required will dictate the number and sizeof inserts required.

In some embodiments, a cannula unit can have a length ranging fromseveral mm to several cm. In some embodiments, a cannula unit has alength of about 5 mm. In some embodiments, the cannula unit has a lengthof up to 2 mm, up to 5 mm, 10 mm, up to 25 mm, up to 50 mm, up to 100 mmlong or more. In some embodiments, the cannula unit has a length in arange of 2 mm to 10 mm, 2 mm to 50 mm, 10 mm to 50 mm, or 10 mm to 100mm.

Accordingly, a suitable number of spacers can be selected and assembledwith the cannula on the arbor in order to generate an end-to-enddistance between the cannulae that is adapted for the size of thescaffold or tissue that is being attached. Typically, the end to enddistance is similar to the length of the tissue or scaffold, but may beslightly shorter to avoid stretching the tissue or scaffold in someembodiments. Depending on the type of scaffold or tissue (e.g., whetherit is a trachea, an oesophagus, or other tubular tissue, and whether itis for a human or an experimental model such as a mouse or rat)different lengths ranging from a several mm (e.g., around 10 mm, forexample around 15 mm) to several cm (e.g., around 10 cm, around 15 cm,around 25 cm, around 50 cm, or longer or shorter) can be used.

In some embodiments, different cannula units are provided with differentcannula outer diameters that are suited for different organ sizes. Forexample, in some embodiments different cannulae have outer diameters ofabout 1 mm, about 1.5 mm, about 2 mm, or about 2.5 mm. In someembodiments, cannulae have outer diameters in a range of 1 mm to 2 mm, 1mm to 5 mm, 1 mm to 10 mm, or 2 mm to 10 mm. These can be used withscaffolds or tissues that have corresponding inner diameters. However,it should be appreciated that cannulae of other sizes (e.g., larger orsmaller) can be provided depending on the intended use. In someembodiments, the outer diameter can be larger, for example 1-5 cm orlarger.

It also should be appreciated that cannula and spacer units are tubularwith an interior space that can have an inner diameter ranging fromaround 1 mm or just below 1 mm to several cms depending on the size ofthe cannula or spacer unit. It should be appreciated that the size ofthe inner diameter is defined by the outer diameter and wall thicknessof the cannula or spacer units. In some embodiments, spacer units areselected to have similar inner diameters as the cannulae that they areconnected to in order to avoid pressure buildup or disruption of fluidflow through the inner space leading to the inner space (the innerchamber) defined by the scaffold that is attached to the cannulae.

It should be appreciated that a scaffold can be attached to a cannulausing any appropriate technique, including but not limited to, using amechanical tether (e.g., a tie, a clip, an O-ring, an elastic elementsuch as an elastic band of a suitable size, etc.), sutures, adhesives,or other connector or attachment means, or any combination thereof. Insome embodiments, the end of a cannula is shaped to allow an end of atubular scaffold or tissue to be secured (e.g., via a suture) to providea tight seal (e.g., to prevent leaks). For example, the tip of thecannula may be ball-shaped or otherwise broadened relative to the neckof the cannula to allow a cylindrical scaffold or tissue end to beplaced over the tip and secured with a suture (or a clamp or othersecuring device) placed over the narrower neck of the cannula. In someembodiments, a cannula is designed to include an end that is ribbed,tapered, or otherwise configured to help attach to an end of a scaffold(e.g., a tubular scaffold for a trachea, esophagus, or other airwayregion).

FIG. 4 illustrates a non-limiting embodiment of an arbor assembly thatis aligned to be inserted into the bioreactor reservoir. Arbor assembly(400) is aligned so that the O-ring end of the assembly is inserted intothe hole that is connected to the lumen flow inlet, and the driveshaftend of the assembly is inserted at the other end of the reservoir andconnected to the driveshaft (400). The driveshaft can be connected byscrewing the driveshaft into the arbor assembly in embodiments where theassembly and driveshaft have complementary threaded ends. However, thedriveshaft and the assembly can be connected using any suitableconnector as aspects of the disclosure are not limited in this respect.

FIG. 4 also shows the cover, although the cover is not shown in place onthe reservoir. When in position, the cover sits loosely to allow for gasexchange. In some embodiments, there is a step-down from each of theends of the reservoir so that the height of the ridge around thereservoir is lower in the middle allowing for gas exchange.

In some embodiments, one or more debubblers are included on the lid or aside or end wall of the reservoir.

In some embodiments, a seal wash function is provided to wash a seal onthe driveshaft. A seal wash inlet and outlet are provided to allow theseal to be flushed with a solution (e.g., a non-salt solution) thatprevents salt buildup on the seal (e.g., from salt in the reservoirsolution). In some embodiments, a seal wash solution can be flushedthrough a separate space between the two outside O-rings on thedriveshaft. This can prevent any buildup of evaporated salt crystalsfrom forming on the turning shaft during long periods of use.

In some embodiments, the lumen flow inlet can be connected to a pump(e.g., a peristaltic pump) to deliver medium through the lumen.

In some embodiments, the reservoir inlet can be connected to a pump(e.g., a peristaltic pump) to deliver medium to the exterior of thescaffold or tissue in the reservoir.

However, in some embodiments, fluid flow through one or more paths canbe driven by mechanical elements connected to one or more rotatingelements within the bioreactor.

In some embodiments, depending on the setting of the function valve, theoutlet of the lumen may change from the lumen flow outlet to thereservoir.

In some embodiments, a bioreactor described herein may include one ormore additional features. For example, a bioreactor can include one ormore sensors for measuring one or more of nutrient composition, nutrientconcentration, dissolved oxygen concentration, dissolved carbon dioxideconcentration, cell concentration, temperature, pH, and osmolality ofthe first fluid. Additionally or alternatively, the bioreactor maycomprise one or more sensors for measuring one or more of nutrientcomposition, nutrient concentration, dissolved oxygen concentration,dissolved carbon dioxide concentration, cell concentration, temperature,pH, and osmolality of the second fluid. In some cases, a first and/orsecond sensor is adapted to measure shear stress or flow rate.

In some embodiments, a gas monitoring system can be used in conjunctionwith the bioreactor described herein. In some embodiments, one or moresensors that provide for the measurement of CO₂, O₂, pH, and/or humidityof the system can be placed in line on the reservoir outlet flow. Insome embodiments, oxygen consumption rate (OCR) can be monitored byplacing a flow through oxygen sensor in the lumen of the flow inletline. However, it should be appreciated that these sensors can bepositioned at other locations as aspects of the disclosure are notlimited in this respect. In some embodiments, one or more sensors thatprovide for the measurement of CO₂, O₂, pH, and/or humidity of thesystem can be included within the bioreactor (e.g., attached to,integral to, or otherwise connected to an internal wall or lid of thebioreactor).

In some embodiments, one or more heating or cooling elements can beincorporated within the bioreactor (e.g., on an inner surface of thereservoir or lid, and/or integrated within one or more of the wallsand/or the base of the reservoir, for example in a Teflon base).

In some embodiments, one or more air or oxygen sources, carbon filters,and/or one or more humidification or dehumidification systems areconnected to the bioreactor and configured to control the level ofoxygen, carbon dioxide, and/or humidity within the bioreactor (e.g., inresponse to signals from the one or more detectors in or attached to thebioreactor). In some embodiments, one or more controllers are attachedto the sensors and other systems to control the internal environment ofthe bioreactor.

In some embodiments, the bioreactor can be sealed (e.g., the lid of thebioreactor can be sealed onto the reservoir) in a configuration thatallows the bioreactor to act as a self-contained incubator withoutneeding to place the bioreactor inside a larger incubator.

In some embodiments, a bioreactor can include one or more light sources(e.g., incandescent, LED, or other light source). These can be placedwithin the bioreactor to illuminate the scaffold and cells or tissuethat are grown on the scaffold. In some embodiments, the scaffold can bemonitored using a camera or other light sensitive device that can beplaced within or outside the bioreactor. In some embodiments, thebioreactor includes a window that allows visible light or other lightwavelengths from within the bioreactor to be detected by a camera orother light sensitive device placed outside the bioreactor. In someembodiments, the inner surface of the window can be wiped from theinside to prevent liquid droplets (e.g., due to the humid air inside thebioreactor) from accumulating on the inner surface and interfering withthe monitoring of the scaffold and or cells or tissue growing on thescaffold. In some embodiments, the surface can be wiped by a wiper thatis connected (e.g., mechanically connected) to the rotating scaffold,scaffold holder, arbor, arbor drive, or other rotating component. Insome embodiments, an encoder on a rotating component of the bioreactor(or on the motor or other system that is driving rotation of thescaffold) can be used to synchronize the light information that isdetected by the camera or other light sensitive device with the rotationof the scaffold. In some embodiments, this allows information about thecell or tissue growth or health based on light information (includingfor example infrared light information) from different portions of thescaffold to be mapped and monitored. In some embodiments, this allowsfor decellularization of a natural scaffold (for example based on theloss of a light signal associated with cellularized tissue) to bemonitored and evaluated.

In some embodiments, a bioreactor described herein also may include oneor more stimulation plates that can be used to stimulate (e.g.,electrically) the scaffold/engineered organ.

In operation, decellularization and/or recellularization medium can beflowed through the lumen and/or through the reservoir of the bioreactordepending on the desired use.

In some embodiments the cover may be sealed on to the reservoir. In someembodiments, a sealed bioreactor can be a self-contained incubator asdescribed herein. In some embodiments, a sealed bioreactor can bepressurized or put under vacuum to assist with cell growth and/ordecellularization depending on the application.

Decellularization

In some embodiments, a bioreactor described herein can be used fordecellularization wherein a natural tissue (e.g., a trachea or theairway) is attached to the cannulae at each end of the arbor and one ormore decellularization media are used to remove cells from the tissuethereby exposing a natural scaffold. One or more decellularization mediacan be placed in one or more external reservoirs and/or introduced(e.g., pumped) through the lumen of the tissue and/or into thebioreactor reservoir using appropriate function valve settings. If theidentical reagent is to be used for both the lumen and the bioreactorreservoir, a Y fitting may be placed inline along with tubing connectingto both the intra-lumen and extra lumen inlet ports.

Recellularization

In some embodiments, a bioreactor described herein can be used forrecellularization wherein a natural or synthetic scaffold is attached tothe cannulae at each end of the arbor and one or more recellularizationmedia are used to promote cell growth and/or differentiation on thescaffold (e.g., after the scaffold has been seeded with cells). One ormore recellularization media can be placed in the reservoir and/orintroduced (e.g., pumped) through the lumen of the tissue usingappropriate function valve settings.

One or more channels of the bioreactor (e.g., intralumenal and/orextralumenal) can be connected to an external reservoir (e.g., a bottle)using tubing or other fluid connectors.

It should be appreciated that the same or different recellularizationmedia can be used for the intraluminal and extra-luminal flow paths ofthe organ. If the identical medium is to be used, a Y fitting may beplaced inline and the tubing from the same reservoir is connected toboth the intra-lumen and extra lumen inlet ports. However, it should beappreciated that independent reagents can be used for the intra-luminalversus the extra luminal flow paths, for example by connecting separatereservoirs to the different inlet ports.

In some embodiments, a single medium may be used for both theintralumenal and extralumenal flow paths. However, in some embodiments,for example when particular additives or factors (e.g., growth factorsand/or cytokines) are used on the intralumenal side, they can berecirculated and separate external intralumenal and extralumenalreservoirs can be used.

Cell Seeding

In some embodiments, one or more of the following acts can be taken toprepare a scaffold for cell seeding. In some embodiments, the bioreactorcan be washed (e.g., with PBS, prior to installing the scaffold. In someembodiments, the components can be washed by running the bioreactor(e.g., at about 5 rpm) with a wash solution in the reservoir.

In some embodiments, a scaffold can be washed and conditioned in culturemedium prior to cell seeding. In some embodiments, the scaffold isattached to the arbor (e.g., to the cannulae at both ends of the arborassembly, and incubated with culture medium in the bioreactor reservoir(e.g., rotating at about 2 rpm for about 2 hours).

Appropriate fluid path and reservoir settings can then be selected andthe reservoir can be filled with an appropriate level of growth medium.

In some embodiments, a cell inoculum (e.g., a cell suspension) is addedto the surface of the scaffold. The seeded scaffold on the bioreactorcan then be placed in a cell incubator. In some embodiments, theincubator is maintained at 37° C. and 5% carbon dioxide atmosphere. Insome embodiments, the bioreactor is set to rotate at about 2 rpm.

Sterilization

In some embodiments, one or more articles of a bioreactor can besterilized using any suitable technique (e.g., autoclaving, plasmasterilization, EtO gas sterilization, etc.). In some embodiments, thecomponents of the reactor are constructed from material that can besterilized as described herein. For example, the reservoir can be a PTFE(e.g., material available under the name Teflon) block; the baseplate,driveshaft, and valves can be steel components; rubber O-rings can besilicone components, luer fittings can be made of polyvinylidenefluoride or PVDF (e.g., material available under the name Kynar), arborcomponents can be made of polyether ether ketone or PEEK, and the covercan be polycarbonate. However, it should be appreciated that othermaterials (e.g., other metallic, plastic, or other polymeric materials)can be used.

In some embodiments, one or more components can be disassembled prior tosterilization. FIG. 5 illustrates a non-limiting embodiment where thedriveshaft and valve are removed from the reservoir block prior tosterilization. FIG. 5 illustrates a non-limiting embodiment of holefeatures that prevent component loss during sterilization. The functionvalve can be removed and stored as shown in (500) during sterilization.The level valve can be removed and stored as shown in (510) duringsterilization. The driveshaft can be removed and stored as shown in(520) during sterilization. In this example, the block includes holesfor storing these components during sterilization. However, these arenot required as aspects of the disclosure are not limited in thisrespect.

In some embodiments, after sterilization a bioreactor can be placed in alaminar flow hood or other sterile environment for assembly to reducecontamination.

Fluid Flow

In some embodiments, fluid flow is promoted by pumps connected toreservoirs, fluid passages, and/or conduits within the bioreactor orattached to the bioreactor. In some embodiments, fluid flow is promotedby a mechanical force (for example driven by rotation of the arborattachment). In some embodiments, the arbor itself, or the rotatingdrive shaft, or other rotating element is connected to one or morepaddles, cups, or other shaped elements that promote fluid movement(e.g., flow through one or more pathways and/or distribution over thescaffold or over cells or tissue growing on the scaffold).

In some embodiments, a reservoir of a bioreactor is shaped to promotefluid flow in one or more directions. In some embodiments, the shape ofthe inner surface of the base of the bioreactor is configured (e.g.,sloped, inclined, or otherwise shaped) to cause fluid (and/or cellularmaterial or debris that is deposited at the bottom of the reservoir) toflow towards one or more points (e.g., low points). In some embodiments,one or more passages or conduits are connected to each low point. Thesecan be useful, for example, to remove material (e.g., cellular material)and either recirculate it, discard it, analyze it, or any combinationthereof. FIGS. 6A-C illustrates a non-limiting embodiment of a reservoir600 configured for containing a culture media and for accepting an arborassembly that is rotatable in the culture media. The reservoir 600 isconfigured with a fluid inlet 601 adapted for permitting fluid (e.g.,culture media) to be supplied to the reservoir 600. The reservoir 600 isalso configured with a fluid outlet 603 adapted for permitting fluid toexit the reservoir 600. In some embodiments, a fluid (e.g., culturemedia) can be continuously circulated through the reservoir 600 from thefluid inlet 601 to the fluid outlet 603. In some embodiments, a fluid(e.g., culture media) can be supplied to the reservoir 600 through thefluid inlet 601, maintained in the reservoir 600 for a period of time,and then removed from the reservoir 600 through the fluid outlet 602.For example, a fluid may be supplied to the reservoir and maintained inthe reservoir (without being removed through the fluid outlet 603) forup to 30 min., 1 hr., 2 hrs., 4 hrs., 8 hrs., 12 hrs., 16 hrs., 18 hrs.,24 hrs., 48 hrs. or more.

As shown in FIGS. 6B and 6C, the lower surface 602 of the reservoir issloped from the fluid inlet 601 to the fluid outlet 603. In someembodiments, the sloped lower surface 602 is advantageous because itfacilitates fluid flow between the fluid inlet 601 and fluid outlet 603.In some embodiments, the sloped lower surface 602 is advantageousbecause it reduces the extent to which cells and other materials presentin fluid (e.g., culture media) within the reservoir 600 collect at thebottom of the reservoir 600 (e.g., at or near the middle of thereservoir). Instead, because of the sloped bottom, cells and othermaterials tend to move under force of gravity down the slope and collectat or near the fluid outlet 603. Thus, when fluid is transferred outthrough the fluid outlet 603 the cells and other materials are readilydrawn out from the reservoir 600.

Materials

It should be appreciated that different materials (e.g., includingmetal, plastic, rubber, a range of different polymers, printed material,for example 3-D printed material, or any combination thereof) can beused to manufacture different components of a bioreactor as describedherein. It should be appreciated that in some embodiments, all or mostcomponents are manufactured in a material that is resistant toautoclaving. It also should be appreciated that in some embodiments, allor more components are compatible with an MRI device (for example theare non-metallic, non-magnetic, or non-paramagnetic). Accordingly, insome embodiments, one or more valve, connector, and other components aremanufactured using one or more MRI compatible materials. In someembodiments, one or more of the reservoir, lid, arbor, drive shaft, andother components of a bioreactor described herein are manufacture usingone or more MRI compatible materials.

It should be appreciated that different configurations can be used fordifferent tissue and organ types. It should be appreciated that theseprinciples may be applied to other organ or tissue scaffolds.

While several embodiments of the present invention have been describedand illustrated herein, those of ordinary skill in the art will readilyenvision a variety of other means and/or structures for performing thefunctions and/or obtaining the results and/or one or more of theadvantages described herein, and each of such variations and/ormodifications is deemed to be within the scope of the present invention.More generally, those skilled in the art will readily appreciate thatall parameters, dimensions, materials, and configurations describedherein are meant to be exemplary and that the actual parameters,dimensions, materials, and/or configurations will depend upon thespecific application or applications for which the teachings of thepresent invention is/are used. Those skilled in the art will recognize,or be able to ascertain using no more than routine experimentation, manyequivalents to the specific embodiments of the invention describedherein. It is, therefore, to be understood that the foregoingembodiments are presented by way of example only and that, within thescope of the appended claims and equivalents thereto, the invention maybe practiced otherwise than as specifically described and claimed. Thepresent invention is directed to each individual feature, system,article, material, and/or method described herein. In addition, anycombination of two or more such features, systems, articles, materials,and/or methods, if such features, systems, articles, materials, and/ormethods are not mutually inconsistent, is included within the scope ofthe present invention.

The indefinite articles “a” and “an,” as used herein in thespecification and in the claims, unless clearly indicated to thecontrary, should be understood to mean “at least one.”

The phrase “and/or,” as used herein in the specification and in theclaims, should be understood to mean “either or both” of the elements soconjoined, i.e., elements that are conjunctively present in some casesand disjunctively present in other cases. Other elements may optionallybe present other than the elements specifically identified by the“and/or” clause, whether related or unrelated to those elementsspecifically identified unless clearly indicated to the contrary. Thus,as a non-limiting example, a reference to “A and/or B,” when used inconjunction with open-ended language such as “comprising” can refer, inone embodiment, to A without B (optionally including elements other thanB); in another embodiment, to B without A (optionally including elementsother than A); in yet another embodiment, to both A and B (optionallyincluding other elements); etc.

As used herein in the specification and in the claims, “or” should beunderstood to have the same meaning as “and/or” as defined above. Forexample, when separating items in a list, “or” or “and/or” shall beinterpreted as being inclusive, i.e., the inclusion of at least one, butalso including more than one, of a number or list of elements, and,optionally, additional unlisted items. Only terms clearly indicated tothe contrary, such as “only one of” or “exactly one of,” or, when usedin the claims, “consisting of,” will refer to the inclusion of exactlyone element of a number or list of elements. In general, the term “or”as used herein shall only be interpreted as indicating exclusivealternatives (i.e. “one or the other but not both”) when preceded byterms of exclusivity, such as “either,” “one of,” “only one of,” or“exactly one of.” “Consisting essentially of,” when used in the claims,shall have its ordinary meaning as used in the field of patent law.

As used herein in the specification and in the claims, the phrase “atleast one,” in reference to a list of one or more elements, should beunderstood to mean at least one element selected from any one or more ofthe elements in the list of elements, but not necessarily including atleast one of each and every element specifically listed within the listof elements and not excluding any combinations of elements in the listof elements. This definition also allows that elements may optionally bepresent other than the elements specifically identified within the listof elements to which the phrase “at least one” refers, whether relatedor unrelated to those elements specifically identified. Thus, as anon-limiting example, “at least one of A and B” (or, equivalently, “atleast one of A or B,” or, equivalently “at least one of A and/or B”) canrefer, in one embodiment, to at least one, optionally including morethan one, A, with no B present (and optionally including elements otherthan B); in another embodiment, to at least one, optionally includingmore than one, B, with no A present (and optionally including elementsother than A); in yet another embodiment, to at least one, optionallyincluding more than one, A, and at least one, optionally including morethan one, B (and optionally including other elements); etc.

In the claims, as well as in the specification above, all transitionalphrases such as “comprising,” “including,” “carrying,” “having,”“containing,” “involving,” “holding,” and the like are to be understoodto be open-ended, i.e., to mean including but not limited to. Only thetransitional phrases “consisting of” and “consisting essentially of”shall be closed or semi-closed transitional phrases, respectively, asset forth in the United States Patent Office Manual of Patent ExaminingProcedures, Section 2111.03.

Use of ordinal terms such as “first,” “second,” “third,” etc., in theclaims to modify a claim element does not by itself connote anypriority, precedence, or order of one claim element over another or thetemporal order in which acts of a method are performed, but are usedmerely as labels to distinguish one claim element having a certain namefrom another element having a same name (but for use of the ordinalterm) to distinguish the claim elements.

The following publications are incorporated herein by reference in theirentireties for all purposes: International Patent ApplicationPublication Serial Number WO2013/163358, which published on a Oct. 31,2013 and is entitled, ENGINEERED TISSUE SCAFFOLDS AND SUPPORTS THEREOF;International Patent Application Publication Serial Number WO2011/034627, which published on a Mar. 24, 2011 and is entitled, METHODSAND APPARATUS FOR INTRODUCING CELLS AT A TISSUE SITE; InternationalPatent Application Publication Serial Number WO 2011/062621, whichpublished on a May 26, 2011 and is entitled, BIOREACTORS, SYSTEMS, ANDMETHODS FOR PRODUCING AND/OR ANALYZING ORGANS; International PatentApplication Publication Serial Number WO 2013/110021, which published ona Jul. 25, 2013 and is entitled, METHOD FOR EVALUATING TISSUE INJURIES;International Patent Application Publication Serial Number WO2013/155488, which published on a Oct. 17, 2013 and is entitled, ELASTICSCAFFOLDS FOR TISSUE GROWTH; International Patent ApplicationPublication Serial Number WO 2014/004746, which published on a Jan. 3,2014 and is entitled, METHODS AND COMPOSITIONS FOR PROMOTING THESTRUCTURAL INTEGRITY OF SCAFFOLDS FOR TISSUE ENGINEERING; InternationalPatent Application Serial Number PCT/US 13/52437, which was filed onJul. 28, 2013 and entitled ANALYTICAL METHODS; International PatentApplication Serial Number PCT/US14/10941, which was filed on Jan. 9,2014.

What is claimed is:
 1. A bioreactor arbor assembly comprising: a firstcylindrical end unit and a second cylindrical end unit, the firstcylindrical end unit and the second cylindrical end unit each having anouter arcuate surface and a planar face connected to the outer arcuatesurface, wherein the planar faces of the first and second cylindricalend units confront one another and are connected via at least oneelongate connecting shaft, the elongate shaft attached to a regiondefined on the outer arcuate surface of the respective first cylindricalend unit and the second cylindrical end unit, e, a first cannula unitconnected to the first cylindrical end unit, a second cannula unitconnected to the second cylindrical end unit, wherein the second cannulaunit is connected via threaded screws onto the second cylindrical endunit, either directly or indirectly, and a spacer unit positionedbetween the first cannula unit and the planar face of the firstcylindrical end unit, wherein the first cannula unit comprises anorifice and the second cannula unit comprises an orifice, wherein thefirst and second cannula units are arranged such that they confront oneanother along a longitudinal axis that passes through the two orifices.2. The arbor assembly of claim 1, wherein a spacer unit is positionedbetween the second cannula unit and the second cylindrical end unit. 3.The arbor assembly of claim 2, wherein a first opening of a tubularscaffold is attached to the first cannula unit and a second opening of atubular scaffold is attached to the second cannula unit.
 4. A bioreactorcomprising a reservoir and the arbor assembly of claim
 1. 5. Abioreactor arbor assembly comprising: a first cylindrical end unit and asecond cylindrical end unit, wherein the first and second end unitsconfront one another and are connected via an elongate shaft, a firstcannula unit connected to the first cylindrical end unit, and a secondcannula unit connected to the second cylindrical end unit, wherein afirst opening of a tubular scaffold is attached to the first cannulaunit and a second opening of a tubular scaffold is attached to thesecond cannula unit, wherein the second cannula end unit is connected tothe second end unit, wherein a spacer unit is positioned between thefirst cannula unit and the first cylindrical end unit end and whereinthe first cannula unit comprises an orifice and the second cannula unitcomprises an orifice, wherein the first and second cannula units arearranged such that they confront one another along a longitudinal axisthat passes through the two orifices.
 6. A bioreactor comprising areservoir and the arbor assembly of claim 5.